R Markdown allows you to combine chunks of R code with Markdown text and produce a nicely formatted HTML, PDF, or Word file, without having to know any HTML or LaTeX code or fuss with getting the formatting just right in a Microsoft Word DOCX file. For more help getting started in R Markdown, please see the R Markdown website or use the 'Get Started' links at the top of this page. There are two main places to get help: The RStudio community is a friendly place to ask any questions about rmarkdown and the R Markdown family of packages. R Markdown supports dozens of static and dynamic output formats including HTML, PDF, MS Word, Beamer, HTML5 slides, Tufte-style handouts, books, dashboards, shiny applications, scientific articles, websites, and more.
“ An R Markdown (.Rmd) file is a record of your research. It contains the code that a scientist needs to reproduce your work along with the narration that a reader needs to understand your work. “ Why. Efficiency. Reproducibility. Interactivity. Automation. Notebook And much more.
See the onlinedocumentation for additional details on using the pdf_document
format.
Creating PDF output from R Markdown requires that LaTeX be installed.
R Markdown documents can have optional metadata that is used to generate adocument header that includes the title, author, and date. For more detailssee the documentation on R Markdown metadata.
R Markdown documents also support citations. You can find more information onthe markdown syntax for citations in theBibliographiesand Citations article in the online documentation.
Many aspects of the LaTeX template used to create PDF documents can becustomized using metadata. For example:
--- |
title: 'Crop Analysis Q3 2013' |
fontsize: 11pt |
geometry: margin=1in |
Available metadata variables include:
lang
Document language code (e.g. 'es', 'fr', 'pt-BR')
fontsize
Font size (e.g. 10pt, 11pt, 12pt)
documentclass
LaTeX document class (e.g. article)
classoption
Option for documentclass
(e.g. oneside); may be repeated
geometry
Options for geometry class (e.g. margin=1in); may be repeated
mainfont, sansfont, monofont, mathfont
Document fonts (works only with xelatex and lualatex, see the latex_engine
option)
linkcolor, urlcolor, citecolor
Color for internal, external, and citation links (red, green, magenta, cyan, blue, black)
linestretch
Options for line spacing (e.g. 1, 1.5, 3)
Table of Contents
R Packages
R Markdown Pdf Not Working
R Markdown Custom Formats: https://blog.rstudio.org/2016/03/21/r-markdown-custom-formats/
tufte
— Documents in the style of Edward Tufterticles
— Formats for creating LaTeX based journal articlesrmdformats
— Formats for creating HTML documents
markdowntemplates
: A collection of alternate R markdown templates https://github.com/hrbrmstr/markdowntemplatesthesisdown
: An updated R Markdown thesis template using the bookdown package https://github.com/ismayc/thesisdownprettydoc
: Creating Pretty HTML From R Markdown http://yixuan.cos.name/prettydoc/rmdTemplates
R package containing a collection of Rmarkdown templates https://github.com/Pakillo/rmdTemplatesmanuscriptPackage
Template for writing manuscripts as an R package https://github.com/jhollist/manuscriptPackagetemplate
A template for my research projects, based on the R package structure https://github.com/cboettig/templatermarkdown-website-template
: Template for creating your website with R markdown. https://github.com/privefl/rmarkdown-website-template
User defined
- Simple template for scientific manuscripts in R markdown: http://www.petrkeil.com/?p=2401
- An R Markdown Template for Academic Manuscripts: http://svmiller.com/blog/2016/02/svm-r-markdown-manuscript/
rmarkdown-article-template
A personal template for Rmarkdown https://github.com/danilofreire/rmarkdown-article-template- R Markdown template for CSUN Master Thesis: https://github.com/carlganz/CSUNtemplate
uiucthemes
: RMarkdown Templates for UIUC Theme-Oriented Documents (e.g. UIUC Beamer) https://github.com/coatless/uiucthemesucbthesis
: Latex, Knitr, and RMarkdown templates for UC Berkeley’s graduate thesis.svm-r-markdown-templates
: R Markdown templates for academic manuscripts, beamer presentations, and syllabi https://github.com/svmiller/svm-r-markdown-templates
R Markdown Cheat Sheet
R Markdown Pdf Table
Chinese
Knit To Pdf R
Template for creating Chinese beamer & PDF on Windows: https://github.com/BruceZhaoR/Zh-beamer